• Introduction to Mathematical Modeling, Systems Biology and Synthetic Biology. (pdf)
• Deterministic chemical kinetics (pdf)
• Crash course in Dynamical Systems (pdf)
  
• Modeling with Copasi (provisório) (pdf)           Modelo1 (copasi)
• COPASI docs (zip)
• Network motifs (pdf)
• Cell Cycle (pdf)
• Cell Cycle Models (pdf)
• Cancer immunotherapy (provisional notes) (pdf)
• Mathematical models of immune-cancer interaction
  (provisional notes) (pdf)
• Stochastic Chemical Kinetics (pdf)
  

Papers for study and final presentations

1. Group 1 (Afonso, Rita, Manol) The mathematics of cancer: integrating quantitative models (PDF)
2. Group 2 (Tiago, Sofia, Manuel) Modeling immunotherapy of the tumor – immune
   interaction (PDF)
3. Group 3 (André, Pedro, João) MATHEMATICAL MODELING OF REGULATORY T CELL EFFECTS ON RENAL CELL CARCINOMA TREATMENT (PDF)
4. Group 4 (Dario, Jia, Helder) PARAMETER ESTIMATION AND TREATMENT OPTIMIZATION IN A STOCHASTIC MODEL FOR IMMUNOTHERAPY OF CANCER (PDF)

Last update: 14 nov 2019

Some recent thesis

• Modelos matemáticos para a transmissão do vírus HIV/SIDA. Ana Carvalho, 2013 (pdf).
  

• Travels into Several Remote Models of HIV-1 Immune Response. In Four Parts. Ricardo Cruz, 2015 (pdf)

• Modelos matemáticos do Ciclo Celular. Nilson Lima, 2016 (pdf)
• Mathematical Models in Cancer. Giuseppe Jordão 2017 (pdf)
  

Presentations

• Stochastic Simulation in Biology A survey. João Nuno Tavares and Ricardo Cruz, Bridges Seminar 2015 (pdf)