Name
|
URL
|
Short
description
|
Availability
|
|
|
|
|
COPASI
|
URL
|
COPASI
is a software application for
simulation and analysis of
biochemical networks and their
dynamics. COPASI is a stand-alone
program that supports models in
the SBML standard and can simulate
their behavior using ODEs or
Gillespie's stochastic simulation
algorithm; arbitrary discrete
events can be included in such
simulations.
|
Ffree
|
CYTOSCAPE
|
URL
|
Cytoscape
is an open source software
platform for visualizing molecular
interaction networks and
biological pathways and
integrating these networks with
annotations, gene expression
profiles and other state data
|
Free
|
CELL
DESIGNER
|
URL
|
CellDesigner
is a structured diagram editor for
drawing gene-regulatory and
biochemical networks. Intuitive
user-interface helps you to draw a
diagram in rich graphical
representation with your own
design.
|
Free
|
| PAJEK
|
URL
|
Analysis
and visualization of large
networks
|
Free
|
|
|
|
|
Last update
|
|
September 2016
|
|